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updated 6/4/2012 2:04:37 PM ET 2012-06-04T18:04:37

The Vatican criticized a popular American nun on Monday, saying her book on sexual ethics, including topics such as masturbation and homosexuality, contradicted Catholic teaching and must not be used by Catholic educators.

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The Vatican's doctrinal department, the Congregation for the Doctrine of the Faith, issued a stern "notification" about Sister Margaret A. Farley, a member of the Sisters of Mercy and a professor emeritus of Christian ethics at Yale University.

The Congregation sharply criticized Farley, saying her writings manifest a "defective understanding of the objective nature of natural moral law" and pose "grave harm to the faithful."

Two months ago the Vatican issued a stinging report saying the umbrella body representing most American Catholic nuns promoted radical feminist ideas and sometimes challenged bishops.

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Monday's notification, signed by department head Cardinal William Levada, an American, and approved by Pope Benedict, sharply criticized Farley's award-winning 2006 book "Just Love, a Framework for Christian Sexual Ethics".

The review of the book took years, as the Vatican repeatedly urged Farley to change her text to conform with church doctrine. She refused, explaining in letters to Rome that the book was not intended to represent Church teachings but rather help readers move beyond a reflexive "taboo morality" and think through sexual ethics in the context of justice, wisdom and love.

"I do not dispute the judgment that some of the positions contained within it are not in accord with current official Catholic teaching," Farley said in a statement issued Monday. "The book was not intended to be an expression of current official Catholic teaching, nor was it aimed specifically against this teaching. It is of a different genre altogether."

Several Catholic theologians also issued statements Monday supporting Farley and describing her as a serious scholar and insightful theologian. Sister Patricia McDermott, president of the Sisters of Mercy of the Americas, expressed "profound regret" at the Vatican's response to the book.

The Vatican rejected Farley's views on four subjects, masturbation, homosexual acts, homosexual unions and remarriage after divorce.

Farley writes that masturbation, particularly in the case of women, "usually does not raise any moral questions at all" and that it "actually serves relationships rather than hindering them".

The Vatican said the Church teaches that masturbation is "an intrinsically and gravely disordered action".

Farley writes that "same-sex oriented persons as well as their activities can and should be respected". The Vatican notification reminded her that while homosexual tendencies are not sinful, homosexual acts are "intrinsically disordered (and) contrary to the natural law".

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Farley writes that homosexual marriage can help reduce hatred, rejection and stigmatization of gays. The Church opposes gay marriage.

The Vatican said Farley's positions "are in direct contradiction with Catholic teaching in the field of sexual morality" and warned the faithful that her book "is not in conformity with the teaching of the Church".

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It also banned the use of the book by Catholic educators.

When the book was published in 2006, America, the weekly magazine of the Jesuit order in the United States, called its contents "an important message in a time in which sexual abuse and violence are rampant and the Catholic Church has failed to protect children from sexual exploitation".

In 2008, the book received the prestigious Louisville Grawemeyer Award for books on religion.

Nuns in the United States are still feeling the sting of a report by the same Vatican department in April that criticized them as being feminist and politicized.

It was issued after a Vatican investigation determined that the Leadership Conference of Women Religious (LCWR), whose 1,500 members represent some 80 percent of about 57,000 American nuns, had "serious doctrinal problems" and promoted "radical feminist themes incompatible with the Catholic faith." Cardinal Levada appointed a trio of bishops to oversee and reform the nuns' organization.

Last week, the Leadership Conference issued a statement rejecting the Vatican's crackdown as "disproportionate" and the cause of "scandal and pain throughout the church community."

A delegation from the LCWR is due to meet with Cardinal Levada next week in Rome. (Additional reporting by Stephanie Simon in Denver; Editing by Tim Pearce)

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Video: Was pope’s butler Vatican’s ‘Deep Throat’?

  1. Closed captioning of: Was pope’s butler Vatican’s ‘Deep Throat’?

    >> the catholic church . who is leaking confidential documents that reveal conflicts within the holy see . the pope's own butler is already in custody. but, is he the sole source ? nbc's michelle kosinski is just outside vatican city . michelle, good morning to you.

    >> good morning, matt. they're calling it vatileaks. this is the seat of power for 1 billion catholics. a seventh of the world's population. worth billions of dollars. now the butler says he will cooperate fully with the investigation. we could see much more of the inner workings here than surely many inside would like. if you've seen pictures of pope benedict , chances are you've seen him but not necessarily noticed paolo gabriele, who rides in the pope mobile , gives the pope his meals, and now accused of stealing confidential documents without even the pope noticing. today, the pontiff's butler is in jail. authorities say at his home were letters to and from the pope himself.

    >> it's shocking in that he was at mass with the pope every morning. he was the breakfast with the pope every morning. so anyone who knows him is simply stunned and shaking their heads.

    >> reporter: a scandal that has electrified the media, this headline reads a cardinal was guiding the leaker.

    >> it is unknown within the vatican . it is not the person alone of the butler who could be responsible for the leaks of the secret documents . it is a network of events who are fighting because they want a change at the top of the papal government.

    >> reporter: the vatican says this is only the beginning of a broad investigation. but denies that a cardinal or a woman as has been reported are also suspects. leaks and embarrassments lately have been seeping out of this bastion of history, economy and privacy.

    >> he does what he can.

    >> reporter: journalists published a book based on the pope's leaked letters. construction contracts at high costs. one letter from the pope's former second in command begs that he be allowed to continue to clean up, improve transparency. instead it was sent to the u.s. the vatican just fired its top banker who claimed he was trying to make it conform to international standards . a sticky web of leaks and allegations in the center of power but also of faith. the journalist who published a lot of this leaked material says he had multiple sources. how fascinating if this is some kind of organized attempt from the inside to change the way the search is functioning by leaking its secrets to 9 world. matt?

    >> all right michelle kosinski just outside vatican city this morning. michelle, thank you very much.

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